Computational phylogenetics
Application of computational algorithms
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We include updates on Needleman–Wunsch algorithm, Smith–Waterman algorithm, BLOSUM, Sequence alignment, Multiple sequence alignment, UPGMA, Hirschberg's algorithm, Substitution model, Complete-linkage clustering, Neighbor joining, Gap penalty, Conserved sequence, Joseph Felsenstein, Disk-covering method, Tree alignment, Generalized tree alignment ... and more.
| 2018 |
Substitution model
Sun et al. published a study demonstrating the annotation of majority-rule consensus of Maximum Parsimony trees with Bayesian posterior probabilities using the Mk model, highlighting a novel application of substitution models in phylogenetic analysis.
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| 2018 |
Substitution model
Posterior mean site frequency (PMSF) model is developed as a computationally-cheaper approximation of empirical-profile mixture models.
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